When I use the Key Frame Wizard and it says Ev settings are skipped. Then it says to go under expert settings and change the threshold settings. It says this occurs because either shutter speeds or fstops were changed during filming. I have no clue how to proceed after this.

Hi Robert,
LRTimelapse tries to automatically detect, if you shot a sequence in M mode or in A mode.
If you shot using the holy grail technique (adjusting shutter speed/iso while shooting) - then I'd suggest you set that threshold level to "0" in the settings.
This will make LRTimelapse detect each change in exosure or ISo as "Holy Grail jump" and mark it with keyframes.
If you however frequently shoot using A mode (not recommended), then you will have changes in Exposure/ISO as well, but it would not be good to use the HOly Grail Workflow on those, so in that case just leave everything like it is.

Basically the message that you are getting means, that not each change in Exposure/ISO has been marked with keyframes.
Best
Gunther

Thank you this is the most supportive software I own. Can't wait to retry.